PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g17441.1.p
Common NameBRADI_4g17441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 249aa    MW: 29264.5 Da    PI: 9.4221
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g17441.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.33e-1954145289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        Y +YA+   F vr+++++   ++ge+ +++fvC+k gk+++ k++       + +r+++ ++rtgC+a++kvk++  +++ ++++e+eHnH+
  Bradi4g17441.1.p  54 HYVDYARWNRFGVRVDYQRPI-KSGETSRAQFVCYKAGKNKKGKEDtqrpesVVPKRKRNITERTGCQARMKVKLD-GATYIMEHFEEEHNHH 144
                       69**************99887.7888****************9999999998889999******************.9**************8 PP

              FAR1  89 l 89 
                       +
  Bradi4g17441.1.p 145 V 145
                       7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1554146IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MCMPIFIYID NMNSAVPDTV ESNEDDDDGD DGISAPKKPA VGMRFDNIEA AKQHYVDYAR  60
WNRFGVRVDY QRPIKSGETS RAQFVCYKAG KNKKGKEDTQ RPESVVPKRK RNITERTGCQ  120
ARMKVKLDGA TYIMEHFEEE HNHHVLKKFN LARYLRSHRH MPREEKEFVK LLHGCNLRTS  180
QMMHILSTLH GKLEDLSYRR TDMANFRVAL RREHCVMDLK FTLQYFNKLK KEDDDFFYSF  240
ELAMKIGR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751700.11e-121PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3IQ671e-180A0A0Q3IQ67_BRADI; Uncharacterized protein
STRINGBRADI1G35320.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1-related sequence 5